IL_3JAN_223

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUACGCG*CCCCCAA

Length

14 nucleotides

Bulged bases

3JAN|1|S2|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|U|1407
3JAN|1|S2|U|1408
3JAN|1|S2|A|1409
3JAN|1|S2|C|1410
3JAN|1|S2|G|1411
3JAN|1|S2|C|1412
3JAN|1|S2|G|1413
*
3JAN|1|S2|C|1433
3JAN|1|S2|C|1434
3JAN|1|S2|C|1435
3JAN|1|S2|C|1436
3JAN|1|S2|C|1437
3JAN|1|S2|A|1438
3JAN|1|S2|A|1439

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

Ribosomal protein uS9

Chain ST

Ribosomal protein eS19

Chain SU

Ribosomal protein uS10