3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
UUACGCG*CCCCCAA
Length
14 nucleotides
Bulged bases
3JAN|1|S2|C|1437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|S2|U|1407
3JAN|1|S2|U|1408
3JAN|1|S2|A|1409
3JAN|1|S2|C|1410
3JAN|1|S2|G|1411
3JAN|1|S2|C|1412
3JAN|1|S2|G|1413
*
3JAN|1|S2|C|1433
3JAN|1|S2|C|1434
3JAN|1|S2|C|1435
3JAN|1|S2|C|1436
3JAN|1|S2|C|1437
3JAN|1|S2|A|1438
3JAN|1|S2|A|1439

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SQ
Ribosomal protein uS9
Chain ST
Ribosomal protein eS19
Chain SU
Ribosomal protein uS10

Coloring options:

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