IL_3JAN_226

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

3JAN|1|S2|C|1554, 3JAN|1|S2|A|1580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|G|1550
3JAN|1|S2|U|1551
3JAN|1|S2|G|1552
3JAN|1|S2|C|1553
3JAN|1|S2|C|1554
3JAN|1|S2|U|1555
3JAN|1|S2|A|1556
3JAN|1|S2|C|1557
3JAN|1|S2|C|1558
*
3JAN|1|S2|G|1577
3JAN|1|S2|U|1578
3JAN|1|S2|A|1579
3JAN|1|S2|A|1580
3JAN|1|S2|C|1581
3JAN|1|S2|C|1582

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SD

Ribosomal protein uS3

Chain SK

Ribosomal protein eS10

Chain SU

Ribosomal protein uS10

Chain Sd

Ribosomal protein uS14