3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GUGCCUACC*GUAACC
Length
15 nucleotides
Bulged bases
3JAN|1|S2|C|1554, 3JAN|1|S2|A|1580
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|S2|G|1550
3JAN|1|S2|U|1551
3JAN|1|S2|G|1552
3JAN|1|S2|C|1553
3JAN|1|S2|C|1554
3JAN|1|S2|U|1555
3JAN|1|S2|A|1556
3JAN|1|S2|C|1557
3JAN|1|S2|C|1558
*
3JAN|1|S2|G|1577
3JAN|1|S2|U|1578
3JAN|1|S2|A|1579
3JAN|1|S2|A|1580
3JAN|1|S2|C|1581
3JAN|1|S2|C|1582

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SD
Ribosomal protein uS3
Chain SK
Ribosomal protein eS10
Chain SU
Ribosomal protein uS10
Chain Sd
Ribosomal protein uS14

Coloring options:

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