IL_3JAN_235
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- UUGG*CUA
- Length
- 7 nucleotides
- Bulged bases
- 3JAN|1|S2|U|1721
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_235 not in the Motif Atlas
- Geometric match to IL_4TS2_003
- Geometric discrepancy: 0.3103
- The information below is about IL_4TS2_003
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_52767.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
3JAN|1|S2|U|1720
3JAN|1|S2|U|1721
3JAN|1|S2|G|1722
3JAN|1|S2|G|1723
*
3JAN|1|S2|C|1811
3JAN|1|S2|U|1812
3JAN|1|S2|A|1813
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SX
- Ribosomal protein uS12
- Chain V
- Ribosomal protein uL14
- Chain n
- Ribosomal protein eL41
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