IL_3JAN_241

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUCC*GGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_241 not in the Motif Atlas

Geometric match to IL_8CRE_417

Geometric discrepancy: 0.3887

The information below is about IL_8CRE_417

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

3JAN|1|S2|U|1839
3JAN|1|S2|U|1840
3JAN|1|S2|C|1841
3JAN|1|S2|C|1842
*
3JAN|1|S2|G|1857
3JAN|1|S2|G|1858
3JAN|1|S2|A|1859

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SO

Ribosomal protein uS11

Chain Sa

Ribosomal protein eS26

Chain n

Ribosomal protein eL41