IL_3JAN_255

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCC*GAGC

Length

7 nucleotides

Bulged bases

3JAN|1|5|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_255 not in the Motif Atlas

Geometric match to IL_4KNQ_003

Geometric discrepancy: 0.2523

The information below is about IL_4KNQ_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3JAN|1|5|G|1466
3JAN|1|5|C|1467
3JAN|1|5|C|1468
*
3JAN|1|5|G|1496
3JAN|1|5|A|1497
3JAN|1|5|G|1498
3JAN|1|5|C|1499

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein eL18

Chain a

Ribosomal protein uL15

Chain b

Ribosomal protein eL29