IL_3JAN_266

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAGAAGCCGG*CUGGCCCUUGAAAAUC

Length

26 nucleotides

Bulged bases

3JAN|1|5|C|2739, 3JAN|1|5|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|2597
3JAN|1|5|A|2598
3JAN|1|5|G|2599
3JAN|1|5|A|2600
3JAN|1|5|A|2601
3JAN|1|5|G|2602
3JAN|1|5|C|2603
3JAN|1|5|C|2604
3JAN|1|5|G|2605
3JAN|1|5|G|2606
*
3JAN|1|5|C|2733
3JAN|1|5|U|2734
3JAN|1|5|G|2735
3JAN|1|5|G|2736
3JAN|1|5|C|2737
3JAN|1|5|C|2738
3JAN|1|5|C|2739
3JAN|1|5|U|2740
3JAN|1|5|U|2741
3JAN|1|5|G|2742
3JAN|1|5|A|2743
3JAN|1|5|A|2744
3JAN|1|5|A|2745
3JAN|1|5|A|2746
3JAN|1|5|U|2747
3JAN|1|5|C|2748

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain R

Ribosomal protein eL19

Chain g

Ribosomal protein eL34

Chain p

Ribosomal protein eL43