3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CGGGGUUUCGUACGUA*UAUUGAAAGUCAGCCCUCG
Length
35 nucleotides
Bulged bases
3JAN|1|5|G|5041, 3JAN|1|5|G|5049, 3JAN|1|5|C|5054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|5|C|4996
3JAN|1|5|G|4997
3JAN|1|5|G|4998
3JAN|1|5|G|4999
3JAN|1|5|G|5000
3JAN|1|5|U|5001
3JAN|1|5|U|5002
3JAN|1|5|U|5003
3JAN|1|5|C|5004
3JAN|1|5|G|5005
3JAN|1|5|U|5006
3JAN|1|5|A|5007
3JAN|1|5|C|5008
3JAN|1|5|G|5009
3JAN|1|5|U|5010
3JAN|1|5|A|5011
*
3JAN|1|5|U|5037
3JAN|1|5|A|5038
3JAN|1|5|U|5039
3JAN|1|5|U|5040
3JAN|1|5|G|5041
3JAN|1|5|A|5042
3JAN|1|5|A|5043
3JAN|1|5|A|5044
3JAN|1|5|G|5045
3JAN|1|5|U|5046
3JAN|1|5|C|5047
3JAN|1|5|A|5048
3JAN|1|5|G|5049
3JAN|1|5|C|5050
3JAN|1|5|C|5051
3JAN|1|5|C|5052
3JAN|1|5|U|5053
3JAN|1|5|C|5054
3JAN|1|5|G|5055

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein uL3
Chain W
Ribosomal protein eL24
Chain d
Ribosomal protein eL31

Coloring options:

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