IL_3JAN_288

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUAUCAA*UGACCACGG

Length

16 nucleotides

Bulged bases

3JAN|1|S2|U|361, 3JAN|1|S2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|C|358
3JAN|1|S2|U|359
3JAN|1|S2|A|360
3JAN|1|S2|U|361
3JAN|1|S2|C|362
3JAN|1|S2|A|363
3JAN|1|S2|A|364
*
3JAN|1|S2|U|396
3JAN|1|S2|G|397
3JAN|1|S2|A|398
3JAN|1|S2|C|399
3JAN|1|S2|C|400
3JAN|1|S2|A|401
3JAN|1|S2|C|402
3JAN|1|S2|G|403
3JAN|1|S2|G|404

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain SI

Ribosomal protein eS8

Chain SL

Ribosomal protein uS17

Chain SX

Ribosomal protein uS12