IL_3JAN_293

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAGUUAAAA*UCCG

Length

13 nucleotides

Bulged bases

3JAN|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|C|663
3JAN|1|S2|A|664
3JAN|1|S2|G|665
3JAN|1|S2|U|666
3JAN|1|S2|U|667
3JAN|1|S2|A|668
3JAN|1|S2|A|669
3JAN|1|S2|A|670
3JAN|1|S2|A|671
*
3JAN|1|S2|U|1161
3JAN|1|S2|C|1162
3JAN|1|S2|C|1163
3JAN|1|S2|G|1164

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

Ribosomal protein uS5

Chain SX

Ribosomal protein uS12

Chain Sa

Ribosomal protein eS26