IL_3JAN_295

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UACUUUG*CUAGGAAUA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|U|801
3JAN|1|S2|A|802
3JAN|1|S2|C|803
3JAN|1|S2|U|804
3JAN|1|S2|U|805
3JAN|1|S2|U|806
3JAN|1|S2|G|807
*
3JAN|1|S2|C|856
3JAN|1|S2|U|857
3JAN|1|S2|A|858
3JAN|1|S2|G|859
3JAN|1|S2|G|860
3JAN|1|S2|A|861
3JAN|1|S2|A|862
3JAN|1|S2|U|863
3JAN|1|S2|A|864

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SH

Ribosomal protein eS7

Chain SL

Ribosomal protein uS17

Chain SW

Ribosomal protein uS8

Chain SX

Ribosomal protein uS12