3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
UAGAGUGUUCAAAGCAG*CUGGAUA
Length
24 nucleotides
Bulged bases
3JAN|1|S2|G|821, 3JAN|1|S2|U|823
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|S2|U|815
3JAN|1|S2|A|816
3JAN|1|S2|G|817
3JAN|1|S2|A|818
3JAN|1|S2|G|819
3JAN|1|S2|U|820
3JAN|1|S2|G|821
3JAN|1|S2|U|822
3JAN|1|S2|U|823
3JAN|1|S2|C|824
3JAN|1|S2|A|825
3JAN|1|S2|A|826
3JAN|1|S2|A|827
3JAN|1|S2|G|828
3JAN|1|S2|C|829
3JAN|1|S2|A|830
3JAN|1|S2|G|831
*
3JAN|1|S2|C|843
3JAN|1|S2|U|844
3JAN|1|S2|G|845
3JAN|1|S2|G|846
3JAN|1|S2|A|847
3JAN|1|S2|U|848
3JAN|1|S2|A|849

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SE
Ribosomal protein eS4
Chain SJ
Ribosomal protein uS4
Chain SY
Ribosomal protein eS24

Coloring options:

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