IL_3JAN_297

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGACGGCC*GAAUGUUUU

Length

17 nucleotides

Bulged bases

3JAN|1|S2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|G|924
3JAN|1|S2|G|925
3JAN|1|S2|A|926
3JAN|1|S2|C|927
3JAN|1|S2|G|928
3JAN|1|S2|G|929
3JAN|1|S2|C|930
3JAN|1|S2|C|931
*
3JAN|1|S2|G|1010
3JAN|1|S2|A|1011
3JAN|1|S2|A|1012
3JAN|1|S2|U|1013
3JAN|1|S2|G|1014
3JAN|1|S2|U|1015
3JAN|1|S2|U|1016
3JAN|1|S2|U|1017
3JAN|1|S2|U|1018

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SB

Ribosomal protein eS1

Chain SN

Ribosomal protein uS15

Chain Sb

Ribosomal protein eS27