IL_3JAN_298

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUGCGCCGCUAG*CUUGGACCGGCGCAA

Length

27 nucleotides

Bulged bases

3JAN|1|S2|U|969, 3JAN|1|S2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|U|945
3JAN|1|S2|U|946
3JAN|1|S2|G|947
3JAN|1|S2|C|948
3JAN|1|S2|G|949
3JAN|1|S2|C|950
3JAN|1|S2|C|951
3JAN|1|S2|G|952
3JAN|1|S2|C|953
3JAN|1|S2|U|954
3JAN|1|S2|A|955
3JAN|1|S2|G|956
*
3JAN|1|S2|C|967
3JAN|1|S2|U|968
3JAN|1|S2|U|969
3JAN|1|S2|G|970
3JAN|1|S2|G|971
3JAN|1|S2|A|972
3JAN|1|S2|C|973
3JAN|1|S2|C|974
3JAN|1|S2|G|975
3JAN|1|S2|G|976
3JAN|1|S2|C|977
3JAN|1|S2|G|978
3JAN|1|S2|C|979
3JAN|1|S2|A|980
3JAN|1|S2|A|981

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain A

Ribosomal protein uL2

Chain SB

Ribosomal protein eS1

Chain SO

Ribosomal protein uS11