3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
UUGCGCCGCUAG*CUUGGACCGGCGCAA
Length
27 nucleotides
Bulged bases
3JAN|1|S2|U|969, 3JAN|1|S2|G|970
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|S2|U|945
3JAN|1|S2|U|946
3JAN|1|S2|G|947
3JAN|1|S2|C|948
3JAN|1|S2|G|949
3JAN|1|S2|C|950
3JAN|1|S2|C|951
3JAN|1|S2|G|952
3JAN|1|S2|C|953
3JAN|1|S2|U|954
3JAN|1|S2|A|955
3JAN|1|S2|G|956
*
3JAN|1|S2|C|967
3JAN|1|S2|U|968
3JAN|1|S2|U|969
3JAN|1|S2|G|970
3JAN|1|S2|G|971
3JAN|1|S2|A|972
3JAN|1|S2|C|973
3JAN|1|S2|C|974
3JAN|1|S2|G|975
3JAN|1|S2|G|976
3JAN|1|S2|C|977
3JAN|1|S2|G|978
3JAN|1|S2|C|979
3JAN|1|S2|A|980
3JAN|1|S2|A|981

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain A
Ribosomal protein uL2
Chain SB
Ribosomal protein eS1
Chain SO
Ribosomal protein uS11

Coloring options:

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