3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GGCGAUGC*GGGCAGCU
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|S2|G|1096
3JAN|1|S2|G|1097
3JAN|1|S2|C|1098
3JAN|1|S2|G|1099
3JAN|1|S2|A|1100
3JAN|1|S2|U|1101
3JAN|1|S2|G|1102
3JAN|1|S2|C|1103
*
3JAN|1|S2|G|1129
3JAN|1|S2|G|1130
3JAN|1|S2|G|1131
3JAN|1|S2|C|1132
3JAN|1|S2|A|1133
3JAN|1|S2|G|1134
3JAN|1|S2|C|1135
3JAN|1|S2|U|1136

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SA
Ribosomal protein uS2
Chain SB
Ribosomal protein eS1
Chain SN
Ribosomal protein uS15
Chain SR
Ribosomal protein eS17
Chain SV
Ribosomal protein eS21
Chain SW
Ribosomal protein uS8
Chain Sa
Ribosomal protein eS26
Chain Sb
Ribosomal protein eS27

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2122 s