3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GCUCAGCGUG*CCGUUGAACCC
Length
21 nucleotides
Bulged bases
3JAN|1|S2|U|1585, 3JAN|1|S2|G|1587
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|S2|G|1541
3JAN|1|S2|C|1542
3JAN|1|S2|U|1543
3JAN|1|S2|C|1544
3JAN|1|S2|A|1545
3JAN|1|S2|G|1546
3JAN|1|S2|C|1547
3JAN|1|S2|G|1548
3JAN|1|S2|U|1549
3JAN|1|S2|G|1550
*
3JAN|1|S2|C|1582
3JAN|1|S2|C|1583
3JAN|1|S2|G|1584
3JAN|1|S2|U|1585
3JAN|1|S2|U|1586
3JAN|1|S2|G|1587
3JAN|1|S2|A|1588
3JAN|1|S2|A|1589
3JAN|1|S2|C|1590
3JAN|1|S2|C|1591
3JAN|1|S2|C|1592

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SD
Ribosomal protein uS3
Chain SF
Ribosomal protein uS7
Chain SQ
Ribosomal protein uS9
Chain ST
Ribosomal protein eS19
Chain SU
Ribosomal protein uS10
Chain SZ
Ribosomal protein es25
Chain Sd
Ribosomal protein uS14

Coloring options:

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