IL_3JAN_305

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGCUA*UAAAAG

Length

11 nucleotides

Bulged bases

3JAN|1|S2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|C|1708
3JAN|1|S2|G|1709
3JAN|1|S2|C|1710
3JAN|1|S2|U|1711
3JAN|1|S2|A|1712
*
3JAN|1|S2|U|1821
3JAN|1|S2|A|1822
3JAN|1|S2|A|1823
3JAN|1|S2|A|1824
3JAN|1|S2|A|1825
3JAN|1|S2|G|1826

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain SX

Ribosomal protein uS12

Chain Se

Ribosomal protein eS30

Chain n

Ribosomal protein eL41