3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
UUGGAUGGUUUA*UUGACUAUCUA
Length
23 nucleotides
Bulged bases
3JAN|1|S2|U|1721
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|S2|U|1720
3JAN|1|S2|U|1721
3JAN|1|S2|G|1722
3JAN|1|S2|G|1723
3JAN|1|S2|A|1724
3JAN|1|S2|U|1725
3JAN|1|S2|G|1726
3JAN|1|S2|G|1727
3JAN|1|S2|U|1728
3JAN|1|S2|U|1729
3JAN|1|S2|U|1730
3JAN|1|S2|A|1731
*
3JAN|1|S2|U|1803
3JAN|1|S2|U|1804
3JAN|1|S2|G|1805
3JAN|1|S2|A|1806
3JAN|1|S2|C|1807
3JAN|1|S2|U|1808
3JAN|1|S2|A|1809
3JAN|1|S2|U|1810
3JAN|1|S2|C|1811
3JAN|1|S2|U|1812
3JAN|1|S2|A|1813

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain SI
Ribosomal protein eS8
Chain SX
Ribosomal protein uS12
Chain V
Ribosomal protein uL14
Chain n
Ribosomal protein eL41

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