IL_3JAP_046

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CGA*UCUUUGG

Length

10 nucleotides

Bulged bases

3JAP|1|2|C|1095, 3JAP|1|2|U|1097, 3JAP|1|2|G|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_046 not in the Motif Atlas

Homologous match to IL_4V88_437

Geometric discrepancy: 0.2707

The information below is about IL_4V88_437

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62898.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

3JAP|1|2|C|1033
3JAP|1|2|G|1034
3JAP|1|2|A|1035
*
3JAP|1|2|U|1094
3JAP|1|2|C|1095
3JAP|1|2|U|1096
3JAP|1|2|U|1097
3JAP|1|2|U|1098
3JAP|1|2|G|1099
3JAP|1|2|G|1100

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

uS5

Chain L

uS17

Chain N

uS15

Chain W

uS8

Chain X

uS12

Chain b

eS27