IL_3JAP_050

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_050 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.208

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

3JAP|1|2|G|1110
3JAP|1|2|G|1111
3JAP|1|2|A|1112
3JAP|1|2|G|1113
3JAP|1|2|U|1114
3JAP|1|2|A|1115
3JAP|1|2|U|1116
3JAP|1|2|G|1117
*
3JAP|1|2|U|1128
3JAP|1|2|G|1129
3JAP|1|2|A|1130
3JAP|1|2|A|1131
3JAP|1|2|A|1132
3JAP|1|2|C|1133

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

uS12

Chain h

eL41