IL_3JAP_055
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- CCUG*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAP_055 not in the Motif Atlas
- Geometric match to IL_3WBM_003
- Geometric discrepancy: 0.3635
- The information below is about IL_3WBM_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
3JAP|1|2|C|1172
3JAP|1|2|C|1173
3JAP|1|2|U|1174
3JAP|1|2|G|1175
*
3JAP|1|2|C|1461
3JAP|1|2|G|1462
3JAP|1|2|C|1463
3JAP|1|2|G|1464
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain Q
- uS9
- Chain S
- uS13
- Chain T
- eS19
- Chain l
- eIF2 beta
Coloring options: