IL_3JAP_057

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_057 not in the Motif Atlas

Geometric match to IL_5W1H_001

Geometric discrepancy: 0.2422

The information below is about IL_5W1H_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

3JAP|1|2|C|1206
3JAP|1|2|A|1207
3JAP|1|2|C|1208
*
3JAP|1|2|G|1452
3JAP|1|2|G|1453

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS19

Chain S

uS13

Chain d

uS14

Chain f

eS31

Chain i

eIF1A