Motif IL_71421.3 Version IL_71421.3 of this group appears in releases 4.6 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8OI5_460 | 8OI5 | 0.4401 | 2 | 1 | LSU rRNA | G | 1619 | G | 1620 | * | U | 1815 | C | 1818 | cWW | ncWW | |
| 2 | IL_4YAZ_007 | 4YAZ | 0.3472 | 2 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | C | 68 | G | 69 | * | U | 47 | G | 50 | cWW | cWW |
| 3 | IL_4LFB_005 | 4LFB | 0.2835 | 2 | Multiple bulged bases | A | SSU rRNA | C | 103 | G | 104 | * | C | 63 | G | 66 | cWW | cWW |
| 4 | IL_8B0X_005 | 8B0X | 0.2590 | 2 | Multiple bulged bases (H) | A | SSU rRNA | U | 103 | G | 104 | * | C | 63 | A | 66 | cWW | cWW |
| 5 | IL_4V9F_021 | 4V9F | 0.2291 | 2 | Multiple bulged bases | 0 | LSU rRNA | C | 726 | G | 727 | * | C | 699 | G | 702 | cWW | cWW |
| 6 | IL_4YAZ_008 | 4YAZ | 0.3050 | 2 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | G | 51 | G | 52 | * | C | 64 | C | 67 | cWW | cWW |
| 7 | IL_5M0H_004 | 5M0H | 0.2540 | 2 | Multiple bulged bases | A | ASH1 E3 (42 nt-TL/TLR) | A | 35 | C | 36 | * | G | 8 | U | 11 | cWW | ncWW |
| 8 | IL_4WF9_071 | 4WF9 | 0.2715 | 2 | Major groove intercalation | X | LSU rRNA | U | 1868 | G | 1869 | * | U | 1925 | A | 1928 | cWW | cWW |
| 9 | IL_8GLP_198 | 8GLP | 0.2357 | 2 | Multiple bulged bases (H) | S2 | SSU rRNA | A | 348 | A | 349 | * | U | 112 | U | 115 | cWW | cWW |
| 10 | IL_8P9A_381 | 8P9A | 0.2418 | 2 | Multiple bulged bases | sR | SSU rRNA | A | 300 | A | 301 | * | U | 113 | U | 116 | cWW | cWW |
| 11 | IL_8CRE_398 | 8CRE | 0.2187 | 2 | Multiple bulged bases (H) | CM | SSU rRNA | A | 298 | A | 299 | * | U | 113 | U | 116 | cWW | cWW |
| 12 | IL_5WLH_001 | 5WLH | 0.2043 | 2 | Multiple bulged bases | B | pre-crRNA | A | -23 | G | -22 | * | C | -7 | U | -4 | cWW | cWW |
| 13 | IL_5W1H_001 | 5W1H | 0.2031 | 2 | Multiple bulged bases | B | mature crRNA | A | -23 | G | -22 | * | C | -7 | U | -4 | cWW | cWW |
| 14 | IL_5XWP_001 | 5XWP | 0.1870 | 2 | Multiple bulged bases | C | RNA (59-MER) | A | 5 | C | 6 | * | G | 22 | U | 25 | cWW | cWW |
| 15 | IL_7OS0_002 | 7OS0 | 0.1736 | 2 | Multiple bulged bases | F | crRNA | A | 11 | C | 12 | * | G | 29 | U | 32 | cWW | cWW |
| 16 | IL_5WTK_001 | 5WTK | 0.1394 | 2 | Multiple bulged bases | B | RNA (58-MER) | A | 3 | C | 4 | * | G | 20 | U | 23 | cWW | cWW |
| 17 | IL_3MXH_004 | 3MXH | 0.1267 | 2 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | G | 56 | G | 57 | * | U | 81 | C | 84 | cWW | cWW |
| 18 | IL_3IWN_004 | 3IWN | 0.1371 | 2 | Multiple bulged bases | A | Cyclic di-GMP-I riboswitch | G | 46 | G | 47 | * | U | 76 | C | 79 | cWW | cWW |
| 19 | IL_9AXU_062 | 9AXU | 0.1262 | 2 | 2 | LSU rRNA | G | 1658 | G | 1659 | * | U | 1874 | C | 1877 | cWW | cWW | |
| 20 | IL_9AXU_081 | 9AXU | 0.0814 | 2 | Major groove intercalation (H) | 2 | LSU rRNA | U | 2288 | G | 2289 | * | U | 2329 | A | 2332 | cWW | cWW |
| 21 | IL_8B0X_134 | 8B0X | 0.0678 | 2 | Major groove intercalation (H) | a | LSU rRNA | U | 1843 | G | 1844 | * | U | 1902 | A | 1905 | cWW | cWW |
| 22 | IL_4V9F_067 | 4V9F | 0.0951 | 2 | Major groove intercalation | 0 | LSU rRNA | U | 1897 | G | 1898 | * | U | 1939 | A | 1942 | cWW | cWW |
| 23 | IL_8OI5_087 | 8OI5 | 0.0697 | 2 | Multiple bulged bases (H) | 1 | LSU rRNA | U | 2178 | G | 2179 | * | U | 2219 | A | 2222 | cWW | cWW |
| 24 | IL_8P9A_313 | 8P9A | 0.0624 | 2 | Major groove intercalation | AR | LSU rRNA | U | 2200 | G | 2201 | * | U | 2241 | A | 2244 | cWW | cWW |
| 25 | IL_8GLP_117 | 8GLP | 0.0000 | 2 | Major groove intercalation (H) | L5 | LSU rRNA | U | 3704 | G | 3705 | * | U | 3745 | A | 3748 | cWW | cWW |
| 26 | IL_9E6Q_070 | 9E6Q | 0.0801 | 2 | Major groove intercalation (H) | 1 | LSU rRNA | U | 1977 | G | 1978 | * | U | 2019 | A | 2022 | cWW | cWW |
| 27 | IL_1U9S_003 | 1U9S | 0.2024 | 2 | Major groove intercalation | A | RNase P class A | U | 116 | G | 117 | * | C | 224 | A | 227 | cWW | cWW |
| 28 | IL_8SP9_001 | 8SP9 | 0.1437 | 2 | Multiple bulged bases | C | Enterovirus 5' cloverleaf cis-acting replication element | C | 106 | G | 107 | * | C | 76 | G | 79 | cWW | cWW |
| 29 | IL_8GLP_027 | 8GLP | 0.2556 | 2 | L5 | LSU rRNA | G | 671 | C | 672 | * | G | 482 | C | 485 | cWW | cWW | |
| 30 | IL_9I0V_004 | 9I0V | 0.3163 | 2 | C | A SELEX-derived artificial RNA aptamer | C | 22 | C | 23 | * | G | 11 | G | 14 | cWW | cWW | |
| 31 | IL_1NBS_009 | 1NBS | 0.2753 | 2 | Major groove intercalation | B | RNase P class B | U | 181 | G | 182 | * | U | 228 | A | 231 | cWW | cWW |
| 32 | IL_6IV9_001 | 6IV9 | 0.2363 | 2 | Multiple bulged bases | B | crRNA (50-MER) | A | -29 | C | -28 | * | G | -9 | U | -6 | cWW | cWW |
| 33 | IL_9DID_004 | 9DID | 0.4682 | 2 | B | frameshifting pseudoknot RNA | A | 15 | U | 17 | * | A | 72 | U | 74 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*UAAA | 7 |
| AC*GACU | 3 |
| GG*UUUC | 2 |
| AA*UCGU | 2 |
| AG*CAAU | 2 |
| GG*UAGC | 2 |
| CG*UAAG | 1 |
| CG*CGUG | 1 |
| UG*CGAA | 1 |
| CG*CAUG | 1 |
| GG*CAGC | 1 |
| AC*GAAU | 1 |
| AA*UGGU | 1 |
| UG*UCAA | 1 |
| UG*UGAA | 1 |
| UG*CAAA | 1 |
| CG*CUAG | 1 |
| GC*GGUC | 1 |
| CC*GAUG | 1 |
| AC*GUCU | 1 |
| ACU*AUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 12 |
| *AG | 3 |
| *AC | 3 |
| *UU | 2 |
| *GU | 2 |
| *GA | 2 |
| *AU | 2 |
| *CG | 2 |
| *GG | 1 |
| *CA | 1 |
| *UA | 1 |
| *UC | 1 |
| C*U | 1 |
Release history
| Release | 4.6 |
|---|---|
| Date | 2026-01-28 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (15)
- Major groove intercalation (5)
- (5)
- Multiple bulged bases (H) (4)
- Major groove intercalation (H) (4)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.28 | Max 0.71
Coloring options: