IL_3JAP_066

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_066 not in the Motif Atlas

Geometric match to IL_6CZR_116

Geometric discrepancy: 0.3812

The information below is about IL_6CZR_116

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

3JAP|1|2|C|1305
3JAP|1|2|U|1306
3JAP|1|2|G|1307
*
3JAP|1|2|C|1316
3JAP|1|2|G|1317

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

eS17

Chain a

eS26