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Motif IL_51454.1 Version IL_51454.1 of this group appears in releases 3.95 to 3.95

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-21-52-53-4
1 IL_8P9A_4338P9A0.58800Minor groove platformsR SSU rRNAC1459A1460C1461*G1178G1179cWWcWW
2 IL_8CRE_4478CRE0.32930Minor groove platform (H)CM SSU rRNAC1445A1446C1447*G1163G1164cWWcWW
3 IL_3K0J_0023K0J0.43680Minor groove platform relatedERNA (87-MER)C18C19U20*A35G36ncSHcWWcWW
4 IL_7TZS_0037TZS0.33050Minor groove platform relatedXTPP riboswitch (THI element)C23C24U25*A35G36ncSHcWWcWW
5 IL_3IWN_0013IWN0.43300Minor groove platformAC-di-GMP riboswitchG89A90U91*A2C3ncWWcWW
6 IL_7A0S_0037A0S0.36910Minor groove platformX LSU rRNAU447C448C449*G42A43cSHcWWcWW
7 IL_9DFE_3489DFE0.39330Minor groove platform1A LSU rRNAU434C435C436*G42A43cSHcWWcWW
8 IL_5J7L_2475J7L0.26090Minor groove platformDA LSU rRNAU434C435C436*G43A44cSHcWWcWW
9 IL_4R4V_0014R4V0.40690Minor groove platformAVS ribozyme RNAU777U778A779*U607G608cWWcWW
10 IL_8CRE_0998CRE0.31371Minor groove platform (H)1 LSU rRNAU2779C2781C2782*G2390A2391cSHcWWcWW
11 IL_7A0S_0767A0S0.38251Minor groove platformX LSU rRNAU2417C2419C2420*G2053A2054cSHcWWcWW
12 IL_8P9A_3228P9A0.42631Minor groove platformAR LSU rRNAU2807C2809C2810*G2412A2413cSHcWWcWW
13 IL_9DFE_0819DFE0.40521Minor groove platform1A LSU rRNAU2438C2440C2441*G2070A2071cSHcWWcWW
14 IL_4WF9_0814WF90.40921Minor groove platformX LSU rRNAU2465C2467C2468*G2097A2098cSHcWWcWW
15 IL_4V9F_0754V9F0.38531Minor groove platform0 LSU rRNAU2473C2475C2476*G2111A2112cSHcWWcWW
16 IL_5J7L_3245J7L0.35861Minor groove platformDA LSU rRNAU2438C2440U2441*A2070A2071cSHcWWcWW
17 IL_7A0S_0287A0S0.25830Minor groove platformX LSU rRNAU925C926C927*G875A876ncSHcWWcWW
18 IL_4V9F_0344V9F0.23100Minor groove platform0 LSU rRNAU1009C1010C1011*G956A957cSHcWWcWW
19 IL_4WF9_0324WF90.26620Minor groove platformX LSU rRNAU958C959C960*G907A908cSHcWWcWW
20 IL_9DFE_0279DFE0.26650Minor groove platform1A LSU rRNAU913C914C915*G862A863cSHcWWcWW
21 IL_8CRE_0178CRE0.21061Minor groove platform (H)1 LSU rRNAC439U440G442*C487G488cSHcWWtHScWW
22 IL_4LFB_0384LFB0.27880Minor groove platformA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
23 IL_5J7L_0425J7L0.32800Minor groove platformAA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
24 IL_1U6B_0071U6B0.35750Minor groove platformB197-MERG128A129G130*C177C178cSHcWWtHScWW
25 IL_6DTD_0036DTD0.30520Minor groove platformCRNA (37-MER)G22A23A24*U15C16cSHcWWtHScWW
26 IL_5ML7_0095ML70.28720Minor groove platformB23S ribosomal RNAC2177A2178G2179*C2201G2202cWWtHScWW
27 IL_2QWY_0092QWY0.23580Minor groove platformCSAM-II riboswitchU40A41G42*C23A24cWWtHScWW
28 IL_8P9A_2678P9A0.15960Minor groove platformAR LSU rRNAU1050U1051U1052*A997A998cSHcWWntHScWW
29 IL_8CRE_0428CRE0.10470Minor groove platform (H)1 LSU rRNAU1046U1047U1048*A993A994ncSHcWWntHScWW
30 IL_6DLR_0036DLR0.00000Minor groove platformAGuanidine-I riboswitchC39U40G41*C21G22cSHcWWtHScWW
31 IL_7MLW_0047MLW0.11110Minor groove platformFGuanidine-I riboswitchC45U46G47*C16G17ncSHcWWtHScWW
32 IL_5T83_0035T830.13880Minor groove platformAGuanidine-I riboswitchC36U37G38*C21G22ncSHcWWntHScWW
33 IL_9DFE_0319DFE0.38000Minor groove platform1A LSU rRNAU877A878G879*C898A899cWWcWW
34 IL_8P9A_4018P9A0.30250Minor groove platformsR SSU rRNAA518C519A520*U532U533cWWntHScWW
35 IL_8CRE_4208CRE0.30740Minor groove platform (H)CM SSU rRNAA516C517A518*U530U531cWWcWW
36 IL_8CRE_4578CRE0.26090Minor groove platform (H)CM SSU rRNAC1291U1292G1293*C1302G1303ncSWcWWcWW
37 IL_8P9A_4438P9A0.29020Minor groove platformsR SSU rRNAC1306U1307G1308*C1317G1318cSHcWWtHScWW
38 IL_8CRE_3948CRE0.35710Minor groove platform (H)CM SSU rRNAC50A51U52*A426G427cWWtHScWW
39 IL_8P9A_3778P9A0.40340Minor groove platformsR SSU rRNAC50A51U52*A428G429cWWtHScWW
40 IL_4LFB_0044LFB0.43370Minor groove platformA SSU rRNAC54A55U56*A356G357cWWtHScWW
41 IL_5J7L_0045J7L0.44470Minor groove platformAA SSU rRNAC54A55U56*A356G357cWWtHScWW
42 IL_6CZR_1166CZR0.49650Minor groove platform1a SSU rRNAC55A56U57*A352G353cWWntHScWW
43 IL_4LFB_0544LFB0.40620Minor groove platformA SSU rRNAC1260A1261C1262*G1273G1274ncWWtHScWW
44 IL_4UYK_0014UYK0.35280Minor groove platformRSRP RNAC122A123C124*G77G78tHScWW
45 IL_8CRE_4198CRE0.45540Minor groove platform (H)CM SSU rRNAU531A532A533*U515A516cWWtHSncWW

3D structures

Complete motif including flanking bases
SequenceCounts
UCC*GA7
CAC*GG6
UACC*GA6
CUG*CG5
CAU*AG5
CCU*AG2
UAG*CA2
UUU*AA2
ACA*UU2
GAU*AC1
UUA*UG1
UACU*AA1
CUUG*CG1
GAG*CC1
GAA*UC1
CAG*CG1
UAA*UA1
Non-Watson-Crick part of the motif
SequenceCounts
A*18
C*11
U*8
AC*7
UU*1

Release history

Release3.95
Date2025-03-26
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (35)
  • Minor groove platform (H) (8)
  • Minor groove platform related (2)
    • Basepair signature
    cWW-cSH-cWW
    Heat map statistics
    Min 0.06 | Avg 0.43 | Max 0.87
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