IL_3JAP_068

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

3JAP|1|2|A|1345, 3JAP|1|2|U|1346

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_068 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2572

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

3JAP|1|2|A|1344
3JAP|1|2|A|1345
3JAP|1|2|U|1346
3JAP|1|2|A|1347
*
3JAP|1|2|U|1375
3JAP|1|2|U|1376
3JAP|1|2|C|1377
3JAP|1|2|U|1378

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS3

Chain Q

uS9

Chain U

uS10