IL_3JAP_070
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAP_070 not in the Motif Atlas
- Homologous match to IL_4V88_458
- Geometric discrepancy: 0.2503
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
3JAP|1|2|C|1387
3JAP|1|2|U|1388
3JAP|1|2|A|1389
*
3JAP|1|2|U|1405
3JAP|1|2|G|1406
3JAP|1|2|G|1407
3JAP|1|2|A|1408
3JAP|1|2|A|1409
3JAP|1|2|G|1410
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- uS7
- Chain Q
- uS9
- Chain R
- eS17
- Chain g
- RACK1
Coloring options: