Motif IL_58032.1 Version IL_58032.1 of this group appears in releases 3.80 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 1-8 | 2-6 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_458 | 4V88 | 0.0000 | 1 | Major groove platform; stack outside cWW | A6 | SSU rRNA | U | 1407 | G | 1408 | G | 1409 | A | 1410 | A | 1411 | G | 1412 | * | C | 1389 | A | 1391 | cWW | tWH | cWW |
| 2 | IL_8C3A_465 | 8C3A | 0.3404 | 1 | CM | SSU rRNA | U | 1393 | G | 1394 | G | 1395 | A | 1396 | A | 1397 | G | 1398 | * | C | 1375 | A | 1377 | cWW | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAAG*CUA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAA*U | 2 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform; stack outside cWW (1)
- (1)
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Heat map statistics
- Min 0.34 | Avg 0.17 | Max 0.34
Coloring options: