IL_3JAP_071
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAP_071 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.2419
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JAP|1|2|G|1478
3JAP|1|2|C|1479
3JAP|1|2|C|1480
3JAP|1|2|A|1481
3JAP|1|2|G|1482
3JAP|1|2|C|1483
3JAP|1|2|G|1484
3JAP|1|2|A|1485
*
3JAP|1|2|U|1517
3JAP|1|2|U|1518
3JAP|1|2|G|1519
3JAP|1|2|U|1520
3JAP|1|2|G|1521
3JAP|1|2|A|1522
3JAP|1|2|A|1523
3JAP|1|2|A|1524
3JAP|1|2|C|1525
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS3
- Chain F
- uS7
- Chain Q
- uS9
- Chain T
- eS19
- Chain U
- uS10
- Chain Z
- eS25
- Chain d
- uS14
Coloring options: