IL_3JAP_075
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 3JAP|1|2|C|1635, 3JAP|1|2|A|1764
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAP_075 not in the Motif Atlas
- Geometric match to IL_5J7L_058
- Geometric discrepancy: 0.2303
- The information below is about IL_5J7L_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
3JAP|1|2|C|1634
3JAP|1|2|C|1635
3JAP|1|2|G|1636
*
3JAP|1|2|C|1762
3JAP|1|2|A|1763
3JAP|1|2|A|1764
3JAP|1|2|G|1765
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- mRNA
- Chain a
- eS26
- Chain i
- eIF1A
Coloring options: