IL_3JAP_078
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 3JAP|1|2|A|1754
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAP_078 not in the Motif Atlas
- Geometric match to IL_5J7L_033
- Geometric discrepancy: 0.3724
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3JAP|1|2|C|1642
3JAP|1|2|G|1643
3JAP|1|2|C|1644
3JAP|1|2|U|1645
*
3JAP|1|2|A|1751
3JAP|1|2|A|1752
3JAP|1|2|A|1753
3JAP|1|2|A|1754
3JAP|1|2|G|1755
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 3
- mRNA
- Chain X
- uS12
- Chain h
- eL41
- Chain i
- eIF1A
- Chain m
- eIF1
Coloring options: