IL_3JAP_089

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

AUCGUU*AAAU

Length

10 nucleotides

Bulged bases

3JAP|1|2|C|114, 3JAP|1|2|G|115

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_089 not in the Motif Atlas

Homologous match to IL_8C3A_399

Geometric discrepancy: 0.5378

The information below is about IL_8C3A_399

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

3JAP|1|2|A|112
3JAP|1|2|U|113
3JAP|1|2|C|114
3JAP|1|2|G|115
3JAP|1|2|U|116
3JAP|1|2|U|117
*
3JAP|1|2|A|298
3JAP|1|2|A|299
3JAP|1|2|A|300
3JAP|1|2|U|301

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain I

eS8

Chain L

uS17