IL_3JAP_092

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UGGU*ACCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAP_092 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.303

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.2

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

4

Unit IDs

3JAP|1|2|U|821
3JAP|1|2|G|822
3JAP|1|2|G|823
3JAP|1|2|U|824
*
3JAP|1|2|A|846
3JAP|1|2|C|847
3JAP|1|2|C|848
3JAP|1|2|A|849

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

uS17