IL_3JAP_095
3D structure
- PDB id
- 3JAP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 3JAP|1|2|C|1273
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAP_095 not in the Motif Atlas
- Geometric match to IL_4LFB_044
- Geometric discrepancy: 0.235
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JAP|1|2|U|1271
3JAP|1|2|G|1272
3JAP|1|2|C|1273
3JAP|1|2|A|1274
3JAP|1|2|U|1275
*
3JAP|1|2|A|1434
3JAP|1|2|U|1435
3JAP|1|2|G|1436
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS3
- Chain K
- eS10
- Chain U
- uS10
- Chain d
- uS14
- Chain f
- eS31
- Chain i
- eIF1A
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