IL_3JAQ_002

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

3JAQ|1|2|A|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_002 not in the Motif Atlas

Homologous match to IL_4V88_386

Geometric discrepancy: 0.2057

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

3JAQ|1|2|U|37
3JAQ|1|2|C|38
3JAQ|1|2|A|39
3JAQ|1|2|A|40
3JAQ|1|2|A|41
*
3JAQ|1|2|U|465
3JAQ|1|2|G|466
3JAQ|1|2|A|467
3JAQ|1|2|C|468
3JAQ|1|2|A|469
3JAQ|1|2|A|470

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain Y

eS24