IL_3JAQ_008

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UCGUU*AAA

Length

8 nucleotides

Bulged bases

3JAQ|1|2|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_008 not in the Motif Atlas

Geometric match to IL_6CZR_157

Geometric discrepancy: 0.3674

The information below is about IL_6CZR_157

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_08069.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

3JAQ|1|2|U|113
3JAQ|1|2|C|114
3JAQ|1|2|G|115
3JAQ|1|2|U|116
3JAQ|1|2|U|117
*
3JAQ|1|2|A|298
3JAQ|1|2|A|299
3JAQ|1|2|A|300

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain I

eS8

Chain L

uS17