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Motif IL_08069.1 Version IL_08069.1 of this group appears in releases 3.95 to 3.95

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-42-53-4
1 IL_8P9A_3718P9A0.62071Isolated non-canonical cWW with bulgesAT 5.8S rRNAU93C94A96*U64A65A66cWWncSWcWW
2 IL_8CRE_1508CRE0.60281Isolated non-canonical cWW pair4 5.8S rRNAU93C94A96*U64A65A66cWWncWWcWW
3 IL_7ELQ_0027ELQ0.60632Isolated non-canonical cWW with bulgesANMT1 RNAC32C33G36*C15A16G17cWWncSWcWW
4 IL_7A0S_1127A0S0.56311Isolated non-canonical cWW with bulgesY 5S rRNAG66C67G69*C19A20C21ncWWncWWncWW
5 IL_7DLZ_0037DLZ0.46931Isolated non-canonical cWW with bulgesXRNA (45-MER)C33C34C36*G12A13G14cWWncWW
6 IL_4V9F_0974V9F0.40201Isolated non-canonical cWW with bulges0 LSU rRNAG2900C2901C2903*G2855A2856C2857cWWncWWcWW
7 IL_5ML7_0105ML70.40831Isolated non-canonical cWW with bulgesB23S ribosomal RNAG2196C2197A2199*U2181A2182C2183cWWcWWcWW
8 IL_4PKD_0014PKD0.35251Isolated non-canonical cWW with bulgesVU1 snRNA stem-loops 1 and 2 (55-MER)A86U87C89*G106U107U108cWWcwWcWW
9 IL_7A0S_0897A0S0.42172Isolated non-canonical cWW with bulgesX LSU rRNAG2553C2554G2557*C2489U2490C2491cWWcWW
10 IL_4WF9_0954WF90.39332Isolated non-canonical cWW with bulgesX LSU rRNAG2601C2602G2605*C2537U2538C2539cWWncWWcWW
11 IL_5J7L_3405J7L0.39842Isolated non-canonical cWW with bulgesDA LSU rRNAG2574C2575G2578*C2510U2511C2512cWWncWWcWW
12 IL_9DFE_0979DFE0.39652Isolated non-canonical cWW with bulges1A LSU rRNAG2574C2575G2578*C2510U2511C2512cWWncWWcWW
13 IL_4V9F_0874V9F0.50002Isolated non-canonical cWW with bulges0 LSU rRNAG2609U2610G2613*U2545U2546C2547cWWcwWcWW
14 IL_8P9A_3358P9A0.42052Isolated non-canonical cWW with bulgesAR LSU rRNAG2943U2944G2947*C2879U2880C2881cWWcwWcWW
15 IL_8CRE_1168CRE0.40722Isolated non-canonical cWW with bulges1 LSU rRNAG2915U2916G2919*C2851U2852C2853cWWcwWcWW
16 IL_7QQX_0047QQX0.15600Isolated non-canonical cWW pairC+AFANCF off-target5 target strandDA11DT12DG13*C8U9U10cWWcWW
17 IL_7MDL_0017MDL0.15640Isolated non-canonical cWW pairESelenocysteine transfer RNAA5||A|BU6||AG7||A*C66||AU67||AU67||A|AcWWcwWcWW
18 IL_8G9Z_0018G9Z0.13490Isolated non-canonical cWW pairESelenocysteine transfer RNAA5||A|BU6||AG7||A*C66||AU67||AU67||A|AcWWcwWcWW
19 IL_1MZP_0011MZP0.12970Isolated non-canonical cWW pairBfragment of 23S rRNAA4U5G6*C50U51U52cWWcwWcWW
20 IL_3RG5_0023RG50.00000Isolated non-canonical cWW pairBSelenocysteine transfer RNAA5|||BU6G7*C66U67U67|||AcWWcwWcWW
21 IL_4KZD_0034KZD0.14810Isolated non-canonical cWW pairRRNA (84-MER)G17U18G19*C66U67C68cWWcwWcWW
22 IL_3LOA_0023LOA0.21460Isolated non-canonical cWW pairB+ARNA (23-mer)G1494U1495C1496*G14055BU1406C1407cWWcwWcWW
23 IL_6E7L_0016E7L0.21160Isolated non-canonical cWW pairARNA (22-mer)C4U5G6*C17||||7_375U18||||7_375G19||||7_375cWWncWWcwWcWW
24 IL_5MWI_0015MWI0.17830Isolated non-canonical cWW pairARNA G(CUG)8C duplexC23||||4_555U24||||4_555G25||||4_555*C2U3G4cWWcwWcWW
25 IL_4PCJ_0014PCJ0.17190Isolated non-canonical cWW pairAtrCUG-3('5)C33U34G35*C1U2G3cWWcwWcWW
26 IL_5VCI_0015VCI0.18620Isolated non-canonical cWW pairB+ARNA (12-mer)C10U11G12*C1U2G3cWWcwWcWW
27 IL_5J7L_0505J7L0.23650Isolated non-canonical cWW pairAA SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
28 IL_4LFB_0474LFB0.18800Isolated non-canonical cWW pairA SSU rRNAG1061U1062C1063*G1193U1194C1195cWWcwWcWW
29 IL_6CZR_1576CZR0.23630Isolated non-canonical cWW pair1a SSU rRNAG1044U1045C1046*G1175U1176C1177cWWncwWcWW
30 IL_4PCJ_0024PCJ0.28180Isolated non-canonical cWW pairAtrCUG-3('5)C4PSU5G6*C30U31G32cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCGAG*CUC4
AUG*CUU4
CUG*CUG4
GUC*GUC3
UCGA*UAA2
GUGAG*CUC2
CCCGG*CAG1
GCAG*CAC1
CCAC*GAG1
GCAC*GAC1
GCCA*UAC1
AUAC*GUU1
GUGAG*UUC1
ATG*CUU1
GUG*CUC1
GUC*G(5BU)C1
CG*CUG1
Non-Watson-Crick part of the motif
SequenceCounts
U*U12
CGA*U4
CA*A3
UGA*U3
CG*A2
CCG*A1
CC*A1
UA*U1
T*U1
U*(5BU)1
(PSU)*U1

Release history

Release3.95
Date2025-03-26
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated non-canonical cWW pair (16)
  • Isolated non-canonical cWW with bulges (14)
    • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.40 | Max 0.77
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