IL_3JAQ_011

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGAUAUC*GCUAAUAC

Length

15 nucleotides

Bulged bases

3JAQ|1|2|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1254

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

3JAQ|1|2|G|142
3JAQ|1|2|G|143
3JAQ|1|2|A|144
3JAQ|1|2|U|145
3JAQ|1|2|A|146
3JAQ|1|2|U|147
3JAQ|1|2|C|148
*
3JAQ|1|2|G|164
3JAQ|1|2|C|165
3JAQ|1|2|U|166
3JAQ|1|2|A|167
3JAQ|1|2|A|168
3JAQ|1|2|U|169
3JAQ|1|2|A|170
3JAQ|1|2|C|171

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain Y

eS24