IL_3JAQ_021

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

3JAQ|1|2|U|379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_021 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0966

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3JAQ|1|2|G|362
3JAQ|1|2|G|363
3JAQ|1|2|G|364
*
3JAQ|1|2|C|375
3JAQ|1|2|G|376
3JAQ|1|2|A|377
3JAQ|1|2|U|378
3JAQ|1|2|U|379
3JAQ|1|2|C|380

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain X

uS12