IL_3JAQ_025

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_025 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.3201

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

3JAQ|1|2|C|442
3JAQ|1|2|C|443
3JAQ|1|2|A|444
3JAQ|1|2|A|445
3JAQ|1|2|U|446
*
3JAQ|1|2|A|459
3JAQ|1|2|G|460

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain Y

eS24