IL_3JAQ_027

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_027 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1787

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

3JAQ|1|2|A|549
3JAQ|1|2|G|550
3JAQ|1|2|G|551
3JAQ|1|2|G|552
3JAQ|1|2|C|553
3JAQ|1|2|A|554
3JAQ|1|2|A|555
3JAQ|1|2|G|556
*
3JAQ|1|2|C|586
3JAQ|1|2|U|587

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

uS5

Chain J

uS4

Chain e

eS30