3D structure

PDB id
3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex in open conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
6 Å

Loop

Sequence
UUUG*CAUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAQ_034 not in the Motif Atlas
Geometric match to IL_1D4R_001
Geometric discrepancy: 0.3338
The information below is about IL_1D4R_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

3JAQ|1|2|U|748
3JAQ|1|2|U|749
3JAQ|1|2|U|750
3JAQ|1|2|G|751
*
3JAQ|1|2|C|797
3JAQ|1|2|A|798
3JAQ|1|2|U|799
3JAQ|1|2|G|800

Current chains

Chain 2
18S rRNA

Nearby chains

Chain E
eS4
Chain H
eS7
Chain L
uS17
Chain W
uS8

Coloring options:


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