IL_3JAQ_034
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- UUUG*CAUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAQ_034 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.3338
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3JAQ|1|2|U|748
3JAQ|1|2|U|749
3JAQ|1|2|U|750
3JAQ|1|2|G|751
*
3JAQ|1|2|C|797
3JAQ|1|2|A|798
3JAQ|1|2|U|799
3JAQ|1|2|G|800
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- eS4
- Chain H
- eS7
- Chain L
- uS17
- Chain W
- uS8
Coloring options: