IL_3JAQ_045
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- GGAUC*GGCAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAQ_045 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.395
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
3JAQ|1|2|G|1040
3JAQ|1|2|G|1041
3JAQ|1|2|A|1042
3JAQ|1|2|U|1043
3JAQ|1|2|C|1044
*
3JAQ|1|2|G|1072
3JAQ|1|2|G|1073
3JAQ|1|2|C|1074
3JAQ|1|2|A|1075
3JAQ|1|2|C|1076
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- uS2
- Chain B
- eS1
- Chain N
- uS15
- Chain a
- eS26
- Chain b
- eS27
Coloring options: