IL_3JAQ_056
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 3JAQ|1|2|G|1227
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAQ_056 not in the Motif Atlas
- Geometric match to IL_4V88_447
- Geometric discrepancy: 0.3444
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
3JAQ|1|2|A|1223
3JAQ|1|2|U|1224
3JAQ|1|2|A|1225
3JAQ|1|2|A|1226
3JAQ|1|2|G|1227
3JAQ|1|2|G|1228
3JAQ|1|2|A|1229
3JAQ|1|2|U|1230
3JAQ|1|2|U|1231
3JAQ|1|2|G|1232
*
3JAQ|1|2|C|1251
3JAQ|1|2|U|1252
3JAQ|1|2|U|1253
3JAQ|1|2|G|1254
3JAQ|1|2|A|1255
3JAQ|1|2|U|1256
3JAQ|1|2|U|1257
3JAQ|1|2|U|1258
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- eS10
- Chain M
- eS12
- Chain d
- uS14
- Chain f
- eS31
Coloring options: