IL_3JAQ_065
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- AAUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- 3JAQ|1|2|A|1345, 3JAQ|1|2|U|1346
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAQ_065 not in the Motif Atlas
- Homologous match to IL_4V88_456
- Geometric discrepancy: 0.1505
- The information below is about IL_4V88_456
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_76458.1
- Basepair signature
- cWW-cSH-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JAQ|1|2|A|1344
3JAQ|1|2|A|1345
3JAQ|1|2|U|1346
3JAQ|1|2|A|1347
*
3JAQ|1|2|U|1375
3JAQ|1|2|U|1376
3JAQ|1|2|C|1377
3JAQ|1|2|U|1378
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS3
- Chain Q
- uS9
- Chain T
- eS19
- Chain U
- uS10
Coloring options: