IL_3JAQ_068

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GCCAGCGA*UUGUGAAAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_068 not in the Motif Atlas

Homologous match to IL_8P9A_448

Geometric discrepancy: 0.1629

The information below is about IL_8P9A_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91698.1

Basepair signature

cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

Number of instances in this motif group

2

Unit IDs

3JAQ|1|2|G|1478
3JAQ|1|2|C|1479
3JAQ|1|2|C|1480
3JAQ|1|2|A|1481
3JAQ|1|2|G|1482
3JAQ|1|2|C|1483
3JAQ|1|2|G|1484
3JAQ|1|2|A|1485
*
3JAQ|1|2|U|1517
3JAQ|1|2|U|1518
3JAQ|1|2|G|1519
3JAQ|1|2|U|1520
3JAQ|1|2|G|1521
3JAQ|1|2|A|1522
3JAQ|1|2|A|1523
3JAQ|1|2|A|1524
3JAQ|1|2|C|1525

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS3

Chain F

uS7

Chain Q

uS9

Chain T

eS19

Chain U

uS10

Chain Z

eS25

Chain d

uS14