IL_3JAQ_072

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

3JAQ|1|2|C|1635, 3JAQ|1|2|A|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_072 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.169

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

3JAQ|1|2|C|1634
3JAQ|1|2|C|1635
3JAQ|1|2|G|1636
*
3JAQ|1|2|C|1762
3JAQ|1|2|A|1763
3JAQ|1|2|A|1764
3JAQ|1|2|G|1765

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain a

eS26