IL_3JAQ_077

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_077 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.3346

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3JAQ|1|2|C|1651
3JAQ|1|2|G|1652
3JAQ|1|2|A|1653
3JAQ|1|2|U|1654
*
3JAQ|1|2|A|1742
3JAQ|1|2|G|1743
3JAQ|1|2|A|1744
3JAQ|1|2|G|1745

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

uS12

Chain h

eL41