IL_3JAQ_080

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_080 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.121

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3JAQ|1|2|U|1667
3JAQ|1|2|G|1668
3JAQ|1|2|A|1669
3JAQ|1|2|G|1670
*
3JAQ|1|2|C|1727
3JAQ|1|2|A|1728
3JAQ|1|2|A|1729
3JAQ|1|2|A|1730

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain I

eS8