IL_3JAQ_082

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_082 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1392

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3JAQ|1|2|A|1676
3JAQ|1|2|G|1677
3JAQ|1|2|G|1678
3JAQ|1|2|A|1679
3JAQ|1|2|U|1680
*
3JAQ|1|2|A|1717
3JAQ|1|2|G|1718
3JAQ|1|2|A|1719
3JAQ|1|2|A|1720
3JAQ|1|2|U|1721

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6

Chain I

eS8