IL_3JAQ_088

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAQ_088 not in the Motif Atlas

Geometric match to IL_4WF9_121

Geometric discrepancy: 0.2301

The information below is about IL_4WF9_121

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

3JAQ|1|2|U|821
3JAQ|1|2|G|822
3JAQ|1|2|G|823
*
3JAQ|1|2|C|847
3JAQ|1|2|C|848
3JAQ|1|2|A|849

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

uS17